- Pakistan's Destabilization Playbook: Khalistan Separatist Activism Within the US, Aparna Pande, Husain Haqqani, C. Christine Fair, Michael Rubin, Seth Oldmixon & Sam Westrop, Hudson Institute, September 2021.
- "Islamist Militancy in Bangladesh Public Awareness and Attitudes," C. Christine Fair and Wahid Abdallah, RESOLVE Network Research Brief No. 4, Bangladesh Research Series September 2017.
- "Pakistan's Strategic Culture: Implications for how Pakistan Perceives Threats and Counters Them," C. Christine Fair, NBR Special Report #61 (Seattle: National Bureau of Research, December 2016).
- "Pakistan's Internal Security Environment," C. Christine Fair in Mapping Pakistan's Internal Dynamics: Implications for State Stability and Regional Security (Seattle: National Bureau of Research, April 2016): pp. 33-58.
- Pakistani Sena: Target India. C. Christine Fair (New Delhi: Kautilya Books, 2015).Hindi translation of Fighting to the End.
- Fighting to Win: The Pakistan Army's Way of War. C. Christine Fair (New York: Oxford University Press, 2014).
- "Policing Insurgencies: Cops as Counterinsurgents (Oxford International Relations in South Asia)," C. Christine Fair and Sumit Ganguly Ed. (New Delhi: Oxford University Press, 2014).
- "The Fighters of Lashkar-e-Taiba: Recruitment, Training, Deployment and Death," Don Rassler, C. Christine Fair, Anirban Ghosh, Arif Jamal, Nadia Shoeb. Combatting Terrorism Center at West Point Occasional Paper. April 2013.
- "Political Violence in Pakistan: 1988-2010: Patterns and Trends," Jacob N. Shapiro, C. Christine Fair, Rasul Bakhsh Rais, IGC Working Paper,12/0063, February 2012.
- "Security Sector Governance in Pakistan: Progress, But Many Challenges Persist," C. Christine Fair, SSR Issue Paper No. 5, January 13, 2012
- Political Islam and Governance in Bangladesh. Ali Riaz and C. Christine Fair (London: Routledge, 2010).
- Counterinsurgency in Pakistan. Seth G. Jones and C. Christine Fair (Santa Monica: RAND, 2010).
- India in Afghanistan and Beyond: Opportunities and Constraints, C. Christine Fair, The Century Foundation, September 2010.
- Pakistan: Can the United States Secure an Insecure State?, C. Christine Fair, Keith Crane, Christopher S. Chivvis, Samir Puri, Michael Spirtas, (Santa Monica: RAND, 2010).
- The Lessons of Mumbai, Angel Rabasa, Robert D. Blackwill, Peter Chalk, Kim Cragin, C. Christine Fair, Brian A. Jackson, Brian Michael Jenkins, Seth G. Jones, Nathaniel Shestak, Ashley J. Tellis. (Santa Monica: RAND, 2009).
- Islamist Militancy in Pakistan: A View from the Provinces. C. Christine Fair (Washington D.C. : PIPA, July 10,2009).
- Securing Afghanistan-Getting back on Track. C. Christine Fair and Seth G. Jones, (Washington D.C. : USIP, 2009).
- Treading on Hallowed Ground: Counterinsurgency Operations in Sacred Spaces. Co-edited with Sumit Ganguly (New York: OUP, August 2008).
- The Madrassah Challenge: Militancy and Religious Education in Pakistan. C. Christine Fair (Washington D.C.: USIP, March 2008).
- Pakistani Public Opinon on Democracy, Islamist Militancy, and Relations with the U.S., C. Christine Fair, Clay Ramsay, Steve Kull (Washington D.C.: USIP/PIPA, January 7, 2008).
- Suicide Attacks in Afghanistan (2001-2007). C. Christine Fair Ed. (Kabul: UNAMA, 2007). NOT PEER REVIEWED.
- Bangladesh at the Crossroads. A. Tariq Karim and C. Christine Fair. United States Institute of Peace Special Report 129, January 2007.
- Fortifying Pakistan: The Role of U.S. Internal Security Assistance. C. Christine Fair and Peter Chalk. (Washington D.C.: USIP, 2006).
- Securing Tyrants or Fostering Reform? Evaluating U.S. Internal Security Assistance to Selected Repressive and Transitioning Regimes. Seth G.Jones, Olga Oliker, Peter Chalk, C. Christine Fair, Rollie Lal, and James Dobbins (Washington D.C.: OSI/RAND, 2006).
- War and Escalation in South Asia. John E. Peters, James Dickens, Derek Eaton, C. Christine Fair, Nina Hachigian, Theodore Karasik, Rollie Lal, Rachel Swanger, Greg Treverton and Charles Wolfe Jr.(Santa Monica: RAND, 2006).
- Islamic Education in Pakistan. C. Christine Fair (Washington D.C.: USIP, March 2006).
- India and Pakistan Engagement: Prospect for Breakthrough or Breakdown. C. Christine Fair. United States Institute of Peace Special Report 129, January 2005.
- "Indo-Iranian Relations: Prospects for Bilateral Cooperation Post 9-11," in The "Strategic Partnership" Between India and Iran. Woodrow Wilson International Center for Scholars, Asia Program Special Report, No. 120 (Washington: Woodrow Wilson International Center for Scholars, May 2004).
- The Counterterror Coalitions: Cooperation with Pakistan and India. C. Christine Fair (Santa Monica: RAND, 2004).
- Urban Battle Fields of South Asia: Lessons Learned from Sri Lanka, India and Pakistan. C. Christine Fair (Santa Monica: RAND, 2004).
- Limited Conflicts Under the Nuclear Umbrella, Indian and Pakistani Lessons from the Kargil Crisis. Ashley J. Tellis, C. Christine Fair, Jamison Jo Medby (Santa Monica: RAND, 2001).
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